PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000868578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 324aa    MW: 36000.5 Da    PI: 7.9445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000868578genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw++yl
    MDP0000868578 15 RGPWTPEEDRKLLAYIQLHGHGSWRSLPQKAGLKRCGKSCRLRWRNYL 62
                     89*********************************************7 PP

2Myb_DNA-binding53.36.6e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
    MDP0000868578  68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-RRTDNEVKNYWNTHL 113
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4651062IPR017930Myb domain
SuperFamilySSF466896.34E-3112109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-241265IPR009057Homeodomain-like
SMARTSM007172.4E-151464IPR001005SANT/Myb domain
PfamPF002492.2E-171562IPR001005SANT/Myb domain
CDDcd001674.64E-121762No hitNo description
PROSITE profilePS5129425.30663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2666117IPR009057Homeodomain-like
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002492.5E-1568113IPR001005SANT/Myb domain
CDDcd001679.87E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGKSSCYAAA SGIKRGPWTP EEDRKLLAYI QLHGHGSWRS LPQKAGLKRC GKSCRLRWRN  60
YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPRR TDNEVKNYWN THLKKRLAKI  120
GFDPVTHKPK AAILGSANGD PKNWSNLSHI AQWESARLQA EARFVKESKL RMLESAPAPS  180
LSDEHHQFAP PLVPQCLDIL RASAWESLIS MSRSSSRSAA LTNMNGQGNV SFGDHHHVND  240
HGINMNAQDY GSNFEAPTSD QQLSSLMGYD DAALMSSVAT GSMNINELFG EYCGDECSEL  300
LPALHHDTGF EFGDAWTSLE QLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374564.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLM5WDU61e-149M5WDU6_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_17s0000g06410.t013e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-91myb domain protein 16